Arang Rhie

Arang Rhie

@ArangRhie

Followers220
Following68

Post-doc fellow in Genome Informatics

Bethesda, MD
Joined on January 06, 2017
Statistics

We looked inside some of the tweets by @ArangRhie and here's what we found interesting.

Inside 100 Tweets

Time between tweets:
6 days
Average replies
1
Average retweets
34
Average likes
67
Tweets with photos
25 / 100
Tweets with videos
0 / 100
Tweets with links
5 / 100
Karen Miga
2 months ago
Excited to share our T2T Consortium website listing information on our effort, links to sequence data and ways to join the growing community of scientists working together to finally close a human reference genome. https://sites.google.com/ucsc.edu/t2tworkinggroup/ … … #AGBT19 @aphillippy @ucscgenomics

Excited to share our T2T Consortium website listing information on our effort, links to sequence data and ways to join the growing community of scientists working together to finally close a human reference genome. https://sites.google.com/ucsc.edu/t2tworkinggroup/ … … #AGBT19 @aphillippy @ucscgenomics

Mash v2 preprint is finally out! "Mash Screen: High-throughput sequence containment estimation for genome discovery" w/ @BrianOndov and co. https://www.biorxiv.org/content/10.1101/557314v1 …

Mash v2 preprint is finally out! "Mash Screen: High-throughput sequence containment estimation for genome discovery" w/ @BrianOndov and co. https://www.biorxiv.org/content/10.1101/557314v1 …

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Karen Miga
2 months ago

Quoted @aphillippy

I am excited to announce the open release of 50x coverage @nanopore ultra-long data of the CHM13 human cell line, and the first gapless assembly of a human X chromosome! Work in progress with @khmiga to finally finish the human reference. Data: https://github.com/nanopore-wgs-consortium/CHM13 … #AGBT19

I am excited to announce the open release of 50x coverage @nanopore ultra-long data of the CHM13 human cell line, and the first gapless assembly of a human X chromosome! Work in progress with @khmiga to finally finish the human reference. Data: https://github.com/nanopore-wgs-consortium/CHM13 … #AGBT19

I am thrilled to share the announcement of our Telomere-to-Telomere (T2T) Consortium and open release of 50x coverage of UL nanopore sequence. Come hear @aphillippy talk on this and first release of the first gapless assembly of the X Chromosome! #AGBT19

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Karen Miga
2 months ago

Replying to @ewanbirney @aphillippy

I should add that my centromere array assembly is only credible due to the careful (and ongoing) validation efforts of @dicentric @GertonJennifer @sergekoren @ArangRhie and Eddie Howe.

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Presenting "Telomere-to-telomere assembly of a complete human X chromosome" today at 11:30am #AGBT19. Slides:

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I am excited to announce the open release of 50x coverage @nanopore ultra-long data of the CHM13 human cell line, and the first gapless assembly of a human X chromosome! Work in progress with @khmiga to finally finish the human reference. Data: https://github.com/nanopore-wgs-consortium/CHM13 … #AGBT19

I am excited to announce the open release of 50x coverage @nanopore ultra-long data of the CHM13 human cell line, and the first gapless assembly of a human X chromosome! Work in progress with @khmiga to finally finish the human reference. Data: https://github.com/nanopore-wgs-consortium/CHM13 … #AGBT19

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NIH HPC
2 months ago
Our #20YearsofBiowulf seminar series kicks off on Thurs 2/28 and features @genome_gov's @sergekoren presenting "Telomere-to-telomere assembly of a complete human X chromosome". See https://go.usa.gov/xEEJH  for details and videocast. @aphillippy @PacBio @nanopore @IRPatNIH

Our #20YearsofBiowulf seminar series kicks off on Thurs 2/28 and features @genome_gov's @sergekoren presenting "Telomere-to-telomere assembly of a complete human X chromosome". See https://go.usa.gov/xEEJH  for details and videocast. @aphillippy @PacBio @nanopore @IRPatNIH

Insights from @TheGeneMyers @PAGmeeting #PAGXXVII improving assemblies w/HiFi reads, likely haplotype phasing/repeat separation, but better @PacBio CCS algorithms needed http://bit.ly/2TAvZau  @Genome10K @erichjarvis @aphillippy @sergekoren @richard_durbin @rhskraus @ArangRhie

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@TheGeneMyers shares insights @PAGmeeting #PAGXXVII to improve assemblies w/HiFi reads, specifically haplotype phasing/repeat separation, but better CCS algorithms needed http://bit.ly/2TAvZau  @erichjarvis @Genome10K @aphillippy @richard_durbin @sergekoren @ArangRhie @rhskraus

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Identifying chromosomes w/karotyping & FISH... but maybe HiC as an inferred karyotype? Check out @kerstin_howe's @sangerinstitute talk @PAGmeeting #PAGXXVII w/details on curation too http://bit.ly/2WHS49c  @Genome10K @erichjarvis @richard_durbin @rhskraus @ArangRhie @aphillippy

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#ICYMI @ArangRhie @aphillippy et al eval sequencing platform + assembly methods for first #VGP data (15 genomes) @PAGmeeting #PAGXXVII & thoughts on re-defining current quality metric of 3.2.4.QV40 @sergekoren @erichjarvis @Genome10K @rhskraus @MahUliano

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Replying to @genomeark @Genome10K and 18 others

NIce pic! And here are some more pics, videos, podcasts, texts. :-) Enjoy

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#ICYMI The @Genome10K #vertebrategenomesproject workshop @PAGmeeting  #PAGXXVII focused on analyses of our 1st genome assembly releases of 14+ species & how to best scale up pipeline production @erichjarvis @aphillippy @ArangRhie @rhskraus @PacBio @ArimaGenomics @bionanogenomics

#ICYMI The @Genome10K #vertebrategenomesproject workshop @PAGmeeting #PAGXXVII focused on analyses of our 1st genome assembly releases of 14+ species & how to best scale up pipeline production @erichjarvis @aphillippy @ArangRhie @rhskraus @PacBio @ArimaGenomics @bionanogenomics

Quoted @genome_gov

Karen Miga emphasizes the importance and attainability of the full assembly of one human genome with the technology available today. #Genomics2020

Yes yes yes. It’s time to finally finish the human genome. @khmiga and I will have a lot to say about this at AGBT next month. Check out our talks if you’ll be at Marco Island https://www.agbt.org/gm-agenda/ 

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Slides talked at @PacBio Developer's conference: Haplotype resolved human genomes https://speakerdeck.com/arangrhie/haplotype-resolved-human-genomes …: few slides have been updated to match the latest HG002 result and added 3 more assemblies in the QV slide.

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How can you tell @AlexDilthey is a true HLA typing enthusiast? Because his tools are named as strangely as the alleles 😜 "HLA*PRG:LA -- HLA typing from linearly projected graph alignments" is now out! Includes support for long reads and assemblies

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Spread the word: "Multiple Investigator Recruitments in Genomics" at @genome_gov! Focus areas include bioinformatics and statistical genomics. The resources @NIH are fabulous (e.g. https://hpc.nih.gov ). Come join us! Apply by Dec 21: https://research.nhgri.nih.gov/apply/ 

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